Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
UVM | rs73043383 | chr2:201968246 | C/T | 3.74E-7 | 66 | 24.62 | 27.9 | 1.27 | KM Plot |
UVM | rs7304464 | chr12:9814266 | G/T | 0.000127 | 67 | 7.6 | 22.33 | 27.9 | KM Plot |
UVM | rs73045343 | chr2:202017408 | G/A | 5.56E-7 | 66 | 24.62 | 27.87 | 1.27 | KM Plot |
UVM | rs7305937 | chr12:9809441 | T/G | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |
UVM | rs7306121 | chr12:9576186 | G/A | 0.000174 | 65 | 27.62 | 22.98 | 7.6 | KM Plot |
UVM | rs7309800 | chr12:9810144 | T/C | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |
UVM | rs7310405 | chr12:9813100 | G/T | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |
UVM | rs7310516 | chr12:9813188 | G/A | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |
UVM | rs7310790 | chr12:9813414 | C/T | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |
UVM | rs7311421 | chr12:9813179 | C/A | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |
UVM | rs7311574 | chr12:9813307 | A/C | 0.000127 | 67 | 7.6 | 22.33 | 27.9 | KM Plot |
UVM | rs7311945 | chr12:9813567 | C/T | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |
UVM | rs73154817 | chr7:151110281 | A/C | 0.00011 | 67 | 26.98 | 24.45 | 7.6 | KM Plot |
UVM | rs7315769 | chr12:9601903 | G/A | 0.000142 | 66 | 27.62 | 23.63 | 7.6 | KM Plot |
UVM | rs73372336 | chr15:29417584 | C/T | 8.47E-5 | 66 | 25.32 | 41.87 | 7.6 | KM Plot |